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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.294 C 0.206 G 0.206 T 0.294 

MOTIF 1-CTGAAAAAN STREME-1
letter-probability matrix: alength= 4 w= 9 nsites= 394 E= 4.3e-004
 0.000117 0.908403 0.040708 0.050772
 0.324949 0.000082 0.000082 0.674887
 0.000117 0.052595 0.904397 0.042890
 0.555837 0.183227 0.248558 0.012379
 0.616226 0.170497 0.188756 0.024520
 0.677042 0.015048 0.170495 0.137415
 0.495107 0.231298 0.145200 0.128395
 0.677770 0.162880 0.098226 0.061123
 0.261408 0.229527 0.187752 0.321314

MOTIF 2-CCCAGG STREME-2
letter-probability matrix: alength= 4 w= 6 nsites= 108 E= 3.8e-002
 0.001235 0.661865 0.191137 0.145763
 0.090471 0.812968 0.000867 0.095695
 0.090471 0.907428 0.000867 0.001235
 0.997031 0.000867 0.000867 0.001235
 0.001235 0.000867 0.878145 0.119753
 0.080512 0.000867 0.917386 0.001235

MOTIF 3-CACYAGRKG STREME-3
letter-probability matrix: alength= 4 w= 9 nsites= 79 E= 1.5e-001
 0.000683 0.998155 0.000480 0.000683
 0.933992 0.048754 0.000480 0.016774
 0.000683 0.676324 0.274036 0.048957
 0.145507 0.451043 0.000480 0.402971
 0.982267 0.000480 0.016571 0.000683
 0.000683 0.000480 0.998155 0.000683
 0.483429 0.000480 0.515409 0.000683
 0.000683 0.000480 0.515409 0.483429
 0.032866 0.000480 0.965972 0.000683

MOTIF 4-CAAAGTGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.6e+000
 0.001539 0.995840 0.001081 0.001539
 0.960012 0.001081 0.001081 0.037825
 0.799822 0.124986 0.073652 0.001539
 0.814870 0.001081 0.182509 0.001539
 0.001539 0.073652 0.923269 0.001539
 0.110396 0.001081 0.291366 0.597157
 0.074111 0.001081 0.778126 0.146682
 0.001539 0.923269 0.073652 0.001539

MOTIF 5-CAAATACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.5e+000
 0.002148 0.994195 0.001509 0.002148
 0.893571 0.052141 0.001509 0.052780
 0.994834 0.001509 0.001509 0.002148
 0.944202 0.052141 0.001509 0.002148
 0.052780 0.174402 0.102772 0.670045
 0.761625 0.052141 0.001509 0.184726
 0.002148 0.994195 0.001509 0.002148
 0.944202 0.001509 0.001509 0.052780

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Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p MOA3_loss_diff.fa
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CPU:		noble-meme.grid.gs.washington.edu
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FINALTIME:	7.79 seconds
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